FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394347
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9390.2381151625345191No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9240.2343114059445108No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8060.20438852076977893No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7750.19652742381709506No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6420.1628007820523549No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6420.1628007820523549No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5860.14860009078299063No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5830.14783933946498895No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5140.13034205915095082No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4770.1209594595622637No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT4330.10980177356490603No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4130.10473009811156164No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4120.10447651433889442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)