FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394347
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36140.9164517544193312No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21450.5439371923711858No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9620.24394758930586513No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9210.23355065462650915No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.18055164613906027No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6430.1630543658250221No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6130.15544685264500555No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6060.15367176623633502No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.1417533289209757No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4520.1146198652455832No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG4440.11259119506424546No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4280.10853385470156994No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4160.10549084942956331No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4160.10549084942956331No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4050.10270142793022388No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3980.10092634152155334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)