FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410500
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24630.6No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11500.2801461632155907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7790.189768574908648No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7730.18830694275274057No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA7120.17344701583434835No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6930.16881851400730816No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6580.1602923264311815No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5810.1415347137637028No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5280.12862362971985383No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4710.11473812423873325No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4580.11157125456760049No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4350.10596833130328868No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4310.10499390986601705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)