FastQCFastQC Report
Sun 21 May 2023
EGAF00007942782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400773
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37650.9394345427461431No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21800.5439488189074614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16940.4226831647840548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16910.42193461136353994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13970.3485763761530842No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12770.31863423933248997No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12190.30416220653586945No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11280.2814560861135855No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10640.26548694647593524No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8920.22256988369975025No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8900.22207084808607366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8660.21608242072195483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8630.21533386730143997No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8530.21283868923305713No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8330.20784833309629142No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8300.20709977967577653No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8210.20485411941423198No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7540.1881364263560669No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7520.18763739074239033No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7290.18189848118510976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.17316535794576982No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6810.1699216264568721No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6750.1684245196158424No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6690.16692741277481268No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6500.16218657444488524No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6210.154950558046575No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6100.15220586217135387No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5830.14546888138672018No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5770.14397177454569046No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5690.14197563209098418No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5680.1417261142841459No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5670.1414765964773076No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5450.13598720472686535No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5230.13049781297642307No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5120.12775311710120194No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4760.11877047605502367No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4700.11727336921399395No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4650.11602578017980254No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4630.11552674456612597No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4560.11378011991825797No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4500.11228301307722825No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4220.10529651448575626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)