FastQCFastQC Report
Wed 31 May 2023
EGAF00007942784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410870
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55251.3447075717380192No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36080.8781366368924477No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36050.877406478934943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26180.6371845109158615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22930.5580840655195074No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11100.27015844427677854No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10770.26212670674422567No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10120.24630661766495485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9940.241925669919926No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9880.2404653540049164No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7950.1934918587387738No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7390.1798622435320174No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6920.16842310219777545No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6390.1555236449485239No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5630.13702631002506876No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5610.13653953805339888No Hit
ACTATCTACCAGTGCTATAACGCAGTTAAAA5540.13483583615255434No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4990.12144960693163287No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4870.11852897510161364No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4860.11828558911577872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4630.11268771144157519No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4350.10587290383819699No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4220.10270888602234284No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4140.10076179813566334No Hit

[OK]Adapter Content

Adapter graph