FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400981
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG14920.3720874555153486No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13740.3426596272641347No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12520.3122342455128797No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG12510.3119848571378694No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11940.297769719762283No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG10810.2695888333861205No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10720.2673443380110279No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9940.24789204476022556No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT8960.22345198400921742No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8820.2199605467590734No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8590.21422461413383675No Hit
CGGAGCCTGAGTGGTGGTGGTGGAGCGGTCAGATTCAACGTTAG8390.209236846633631No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG8180.20399969075841498No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7990.19926131163321956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7780.1940241557580035No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7440.18554495100765372No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7270.18130534863247885No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7220.1800584067574274No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7170.17881146488237595No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6410.15985794838159414No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5870.14639097613103863No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5850.14589219938101805No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5580.13915871325574028No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5470.13641544113062715No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5160.12868440150530824No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5040.1256917410051848No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT5030.1254423526301745No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4920.12269908050506133No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4850.12095336187998933No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT4810.11995580837994818No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4810.11995580837994818No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT4570.1139704873797013No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4540.11322232225467042No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC4400.1097308850045264No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4350.10848394312947497No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA4290.10698761287941325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)