FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400981
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC17630.43967170514313647No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG15290.38131482539072925No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC14880.37108990201530745No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG13880.34615106451427874No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13300.33168653876368204No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12770.31846895488813687No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC12040.30026360351238585No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11500.28679663126183036No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10580.26385290076088397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9870.24614632613515355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9730.24265488888500952No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9450.23567201438472146No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9300.23193118875956714No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9230.23018547013449517No Hit
AAAGCAAAAGTAGTTGCCGAAAAAGGTTTCA8810.21971115838406308No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8380.20898745825862075No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8040.20050825350827095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7840.19552048600806524No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7530.1877894463827463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7370.18379923238258172No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7000.17457186250720108No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6920.1725767555071188No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6700.1670902112568925No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6500.16210244375668673No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.16210244375668673No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6400.15960856000658386No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5840.14564281100600776No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5640.14065504350580202No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5270.13142767363042138No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5270.13142767363042138No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5210.12993134338035967No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5200.1296819550053494No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5170.1289337898803185No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4740.11821008975487617No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC4690.11696314787982473No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4610.11496804087974243No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4280.10673822450440296No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA4170.1039949523792898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)