FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383841
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28830.7510922491344072No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11270.29361115670290566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10360.2699034235529816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7310.19044343881971962No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6800.1771566872741578No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6590.17168567193186762No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6030.15709629768576053No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5400.14068325165889No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5080.13234646637540023No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4850.12635440195289196No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4790.12479125471223762No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4460.11619394488863878No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4410.11489132218809352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)