FastQCFastQC Report
Wed 31 May 2023
EGAF00007942790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454779
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18080.3975557358629136No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15910.3498402520784821No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8040.17678916572664963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7990.1756897306164093No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6170.13567029260366023No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5890.12951345598631422No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5630.12379639341306437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4860.10686509271536283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)