FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410002
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39080.9531660821166725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36560.8917029673025986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12800.3121935990556144No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11140.2717059916780894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9640.2351208042887596No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8820.21512090184925928No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8560.2087794693684421No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8360.20390144438319813No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7740.1887795669289418No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7250.17682840571509406No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7180.17512109697025868No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7180.17512109697025868No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7030.17146257823132569No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6840.16682845449534392No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6630.16170652826083776No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5750.14024321832576428No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5620.13707250208535568No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5520.1346334895927337No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5130.12512134087150795No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5100.12438963712372135No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4760.11609699464880659No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4630.112926278408398No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4460.10877995717094063No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4340.10585314217979425No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4290.10463363593348324No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4110.10024341344676366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)