FastQCFastQC Report
Wed 31 May 2023
EGAF00007942795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366859
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14240.388160028784901No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13240.3609015997971973No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11210.3055669889521587No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10930.2979346288356017No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7650.20852698175593348No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6980.190263834334172No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4980.13574697635876454No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA4590.1251161890535601No Hit
CAGCAGTGCGCCGTTACGTTTGAAGACATCGTCTTCTTCTTCGC4360.11884675038638824No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG4090.11148697455970823No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT3790.1033094458633971No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT3730.10167394012413487No Hit
CACGTTGATACCAGCGCCGCTGTTGCGGGATACGCTCAGGGACT3680.1003110186747497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)