FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366859
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33630.9167009668564761No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27260.7430647742048034No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14070.3835260958569914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13470.36717103846436916No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8180.22297394911941645No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7390.2014397902191305No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5020.1368373135182727No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA4750.12947753769159268No Hit
GCGAAAAACACCACTATCGCACTGCAGGCTG4440.12102742470540453No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4330.11802899751675712No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA4280.11666607606737192No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4180.11394023316860155No Hit
GCAGTTGCGCCGGAACCAGTAGCACCGGCTC3980.10848854737106081No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG3850.10494495160265932No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3700.10085618725450378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)