FastQCFastQC Report
Sun 21 May 2023
EGAF00007942798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420161
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39440.9386877887286064No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC29600.7044918495529096No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG25970.6180963963813871No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG24740.588821903984425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18800.44744752606738847No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC17320.41222293358974293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16610.3953246493606022No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15430.3672401769797768No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13590.3234474403859473No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT12840.3055971401438972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12280.2922689159631665No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12070.2872708318953925No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11360.27037254766625174No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10350.246334143340291No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10180.24228807528542629No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC9660.22991186711760495No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8250.19635330266255077No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8040.19135521859477675No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7800.18564312251732076No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6960.16565078624622465No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6550.15589262211390395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6490.15446459809453994No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6020.14327840994285523No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5840.1389943378847632No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5740.13661429785248988No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5680.13518627383312587No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5580.13280623380085255No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5270.12542810970080517No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5200.12376208167821383No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5190.12352407767498651No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC5190.12352407767498651No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5180.12328607367175916No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5120.12185804965239515No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4920.11709796958784847No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4720.11233788952330179No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4440.10567377743293642No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4330.10305573339743573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)