FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381240
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19160.502570559227783No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14450.3790263351169867No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12620.331025076067569No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10740.28171230720805795No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10610.27830238170181515No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10090.264662679676844No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9670.2536459972720596No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9430.24735075018361136No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9420.2470884482215927No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9160.24026859720910712No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8140.2135137970832022No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7640.2003986989822684No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7150.18754590284335326No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6780.17784073024866226No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6770.17757842828664358No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5740.15056132619871995No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5660.14846291050257057No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5500.14426607911027176No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5060.13272479278145No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4990.13088867904731927No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4880.12800335746511385No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4160.10911761619976916No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4040.10596999265554508No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3870.10151085930122758No Hit
ACCCGGGCGCTGGCCTTCTGCACCCCAGCTGAAACGGGACAGGG3820.1001993494911342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)