FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381240
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33120.8687440982058545No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19960.5235547161892771No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17900.4695205120134298No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13280.3483370055608016No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12120.31790997796663517No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11750.30820480537194417No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11550.30295876613157063No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10730.28145000524603925No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10250.2688595110691428No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10170.2667610953729934No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9940.2607281502465639No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9200.2413178050571818No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8330.218497534361557No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8170.21430070296925818No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8050.2111530794250341No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7240.18990662050152135No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.1542335536669814No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5870.15397125170496273No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5670.14872521246458925No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5390.1413807575280663No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5210.13665932221173016No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5210.13665932221173016No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5180.13587241632567412No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4790.12564263980694576No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4780.12538033784492708No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4470.11724897702234813No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4210.11042912600986254No Hit
TCTCTGCCGCAGAAATCTCACGGTCGCACTC4050.10623229461756376No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3840.10072395341517155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)