FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380583
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35280.9269988412514484No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20370.5352314738178006No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14160.37206075941384664No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12850.3376398840725939No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12240.3216118428831556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11270.2961246298442127No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11060.2906067795986684No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10520.2764180218244115No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10140.2664333404277122No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7820.20547423295312717No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7700.20232117566995897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7440.19548955155642792No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7120.18708139880131272No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7010.18419109629174188No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6540.17184162193266647No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4720.12402025313794887No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4530.11902791243959925No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4290.11272179787326286No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4260.11193353355247082No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4150.10904323104289997No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4040.10615292853332914No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3980.10457639989174504No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG3810.10010956874059009No Hit

[OK]Adapter Content

Adapter graph