FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402108
Sequences flagged as poor quality0
Sequence length44
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT33900.8430570891402309No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG27660.6878748992807903No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG20180.5018552229749221No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19680.48942075263362084No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18460.4590806450008455No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15680.3899449899032101No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15380.3824843076984293No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14920.37104459498443204No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14640.36408129159330327No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12260.3048932127687089No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11620.2889770907318432No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11570.28773364369771304No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT11170.277786067424672No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT11110.27629393098371585No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11000.2735583475086295No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG10370.25789091487858984No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10200.2536631949625474No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9720.24172610343489806No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9290.23103245894137894No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGGTTG8670.21561371571816526No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8650.21511633690451323No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8270.2056661394451242No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8260.20541745003829817No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8110.20168710893590777No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG7910.19671332079938725No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT7840.19497249495160504No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7340.1825380246103037No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7330.18228933520347768No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA7220.1795537517283914No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7110.1768181682533051No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6820.1696061754553503No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6620.16463238731882976No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6510.16189680384374347No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6430.15990728858913528No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT6280.15617694748674485No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5970.14846757587513804No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5960.148218886468312No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5950.14797019706148598No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT5890.14647806062052982No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5880.14622937121370377No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5710.14200165129766132No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT5490.13653048434748874No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5460.13578441612701067No Hit
GTCAGAGGTGGCGAAGACGGTCGGAGAGCCCACACCGGAACGCA5380.13379490087240245No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5110.12708028688809972No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5090.12658290807444766No Hit
CATAGAGTCCTGCAGCGGCATCGGCGGCGGCGGGAAACGGGTCG5080.12633421866762162No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4990.12409601400618739No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA4770.1186248470560148No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4730.1176300894287107No Hit
CGGAGAACCGCCCTGACCCATAACCTGAATCGGCTGCAGGACCG4670.11613795298775455No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4650.11564057417410248No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4510.11215892247853809No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4510.11215892247853809No Hit
TTTAGACGGAGGGATGTCGGTCGGTGGCATCGGGCCCACGCCAC4430.11016940722392989No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4390.10917464959662579No Hit
CGGCGGCAGCGGCATCGGAGGGATGTTGTAGAAAACGGTCGGGG4320.1074338237488436No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4260.10594168730788743No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4240.10544430849423539No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG4220.10494692968058333No Hit
CATGCTATCCTGCAGCGGCATCGGTGGCGGAGGGAAACGGGTCG4210.1046982402737573No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4060.1009678991713669No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC4050.10071920976454088No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4050.10071920976454088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)