FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355104
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32320.9101558979904478No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24140.6798008470757863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9470.2666824366946021No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7040.1982517797602956No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5450.15347616472920608No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5320.14981526538704154No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5060.14249346670271243No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC4850.13657970622690818No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4610.129821122825989No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4550.12813147697575922No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC3780.10644768856447688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)