FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512829
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16760.32681459121851536No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14460.281965333473731No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14200.27689541738084233No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12620.24608592727790357No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11850.23107117577204098No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11430.22288131131429778No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8450.16477227301888153No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7650.14917253119460872No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7530.14683256992096783No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6470.12616291200380633No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6400.12479793459418247No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6370.12421294427577224No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5500.10724822504187556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)