FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512829
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30620.5970801183240417No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21330.41592811638967375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14780.28820523020344013No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14630.285280278611389No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13830.2696805367871162No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13010.25369080141723654No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12750.24862088532434787No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9250.18037201484315435No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8430.16438227947327472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8140.15872737306197582No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8140.15872737306197582No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6940.13532776032556662No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6710.13084283455108817No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6460.12596791523100292No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6270.12226297654773814No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5680.11075816695233694No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5560.10841820567869603No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5240.1021783089489869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)