FastQCFastQC Report
Wed 31 May 2023
EGAF00007942816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481890
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29020.6022121230986325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25140.5216958226981261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13290.2757890804955488No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10670.2214198261013924No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9160.19008487414140157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8750.18157670837743053No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7910.1641453443731972No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7890.16373031189690593No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7070.14671398036896385No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6810.14131855817717737No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.1243022266492353No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5690.11807673950486625No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5300.1099836062171865No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5140.10666334640685633No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4880.10126792421506982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)