FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485688
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30460.6271515870270626No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28170.5800019765775559No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13970.287633213091532No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10730.2209237205778195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.18983380277050288No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9190.1892161222842648No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8160.16800909225675742No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7720.15894977845859892No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6680.13753685493567885No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6290.12950700861458384No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6090.12538913870632998No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5680.11694750539440958No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5510.11344731597239381No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5390.11097659402744149No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4900.10088781275221952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)