FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493034
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29120.5906286381872244No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12110.24562200578459092No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11340.23000442160175566No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7860.1594210541260846No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.15232215222479586No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6760.1371102195791771No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6170.12514349923129034No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5700.11561068810670258No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5640.1143937334950531No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5280.10709200582515606No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5170.10486092237046532No Hit
GGCGAAATTACTGCAGCAGATATCGGTCGTA5030.10202136160994983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)