FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511571
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11920.2330077349967062No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10490.20505462584861142No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10360.20251343410787556No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7400.14465245293419682No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5440.10633910053540956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)