FastQCFastQC Report
Sun 21 May 2023
EGAF00007942823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459269
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11960.2604138315453471No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10390.22622907272208662No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7740.16852868362550052No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7600.16548036118266202No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6420.13978735773588027No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5250.11431209160644416No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5180.11278793038502491No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5050.10995734525953199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)