FastQCFastQC Report
Wed 31 May 2023
EGAF00007942824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459269
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28260.615325658818688No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25750.5606735921649403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8570.18660088096518598No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.17440759119383195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7690.1674399970387725No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6140.13369071285020326No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6020.13107786504205599No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5630.12258610966557726No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5460.11888457527070191No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5360.11670720209724585No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4670.1016833272003989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)