FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475345
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33260.6997023214717731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28470.5989334062628197No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28200.5932533212719183No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23440.49311552661750935No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC21590.45419642575392605No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21090.44367774984484953No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20600.43336944745395445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20540.4321072063448653No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19720.4148565778539798No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19090.40160304620854326No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18640.3921362378903744No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG18320.38540428530856535No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15600.32818268836318887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15580.3277619413268258No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13720.28863246694506095No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13060.27474781474507987No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC12940.2722233325269015No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12750.26822623568145243No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12020.2528689688542006No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11870.24971336608147765No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11380.23940506369058262No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG11200.23561834036331508No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10600.22299592927242318No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9900.20826978299971602No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9780.20574530078153763No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9400.19775110709063945No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9260.19480587783609798No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9130.1920710220997381No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9040.1901776604361043No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7840.16493283825432054No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7690.1617772354815976No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7640.16072536789068992No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7490.15756976511796694No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7290.15336229475433633No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6970.14663034217252732No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6930.1457888480998012No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG6720.14137100421798904No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6430.13527017219072462No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG6370.13400793108163545No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6010.1264344844271003No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5930.12475149628164807No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5920.12454112276346653No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5780.1215958935089251No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5700.11991290536347285No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5650.11886103777256518No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5590.117598796663476No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5540.11654692907256835No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5520.11612618203620528No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5520.11612618203620528No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5350.11254983222711926No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5260.11065647056348547No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC5120.10771124130894404No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4990.10497638557258412No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4760.10013779465440892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)