FastQCFastQC Report
Sun 21 May 2023
EGAF00007942832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430065
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25990.6043272528571263No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21400.49759920012091197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15690.36482857242509853No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10910.2536825828653808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10050.23368560566426003No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9780.22740748491507098No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9400.21857161126806413No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9340.2171764733237999No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9110.21182844453745364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8680.20182995593689326No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8240.19159894434562216No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7310.16997430620952644No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6790.15788311069256972No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6780.15765058770185902No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5910.13742108751002755No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5830.1355609035843419No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4920.1144013114296676No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4790.11137851255042842No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4660.10835571367118924No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4340.10091497796844663No Hit

[OK]Adapter Content

Adapter graph