FastQCFastQC Report
Sun 21 May 2023
EGAF00007942836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452753
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27390.6049656214315532No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27080.5981186209699328No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25340.5596870699918057No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17710.3911625102428918No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC17450.38541986469443607No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15760.34809266862947347No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG12170.26879998586425713No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11530.2546642429757506No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11530.2546642429757506No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11520.2544433719931177No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10960.24207459696567443No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10340.22838059604243371No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8660.19127427096010408No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8580.18950730309904076No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8240.18199768968952165No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7660.1691871726968126No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7530.16631584992258472No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7520.16609497893995182No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7350.16234017223519226No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7280.16079407535676185No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7150.15792275258253397No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7060.15593491373883775No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6530.14422875165929325No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6460.14268265478086284No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5560.12280426634390053No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5550.12258339536126762No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5400.11927033062177392No Hit
GCATGCGCTGGTTTCAAAGTTGATAACCCGA4950.10933113640329276No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4940.10911026542065982No Hit
CCGGAAGCACCGATCCTGTTCCCGGATGACT4790.10579720068116612No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4680.10336761987220404No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4640.10248413594167238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)