FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437297
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61981.4173433616054993No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30150.6894627678671476No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15420.35262075888926747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15060.34438836763115227No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11940.2730409767274873No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6920.15824485418376985No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5890.13469106808416248No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5380.12302851380183262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5370.12279983626688497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5280.12074173845235618No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4500.10290489072643993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)