FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495486
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17810.3594450700927978No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17720.35762867164763484No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15910.3210988806949137No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14650.2956693024626326No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12600.25429578232281036No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11840.23895730656365669No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11310.22826073794214163No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG11290.22785709384321653No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11080.22361883080450307No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10860.219178745716327No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10550.21292226218298801No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9440.1905200146926452No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9070.18305259886253095No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8660.1747778948345665No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8490.17134691999370316No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8070.16287039391627614No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8030.16206310571842594No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7950.16044852932272557No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT7410.149550138651748No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7270.14672462995927232No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6880.13885357003023294No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6830.1378444597829202No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6790.13703717158507No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6760.13643170543668237No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6430.1297715778044183No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6360.12835882345818045No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6350.1281570014087179No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6300.12714789116140518No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6180.12472602656785459No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG6020.12149687377645384No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5970.12048776352914109No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5750.11604767844096504No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5720.1154422122925774No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5630.11362581384741445No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5590.11281852564956427No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5580.11261670360010173No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5540.11180941540225153No Hit
ATCGGCGTCTGCGGTGACACCCATATCTTCCGCAGTCATCTGAA5360.10817661851192566No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5240.10575475391837509No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5170.10434199957213726No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5160.10414017752267471No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5020.10131466883019905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)