FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495486
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40030.8078936639985792No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31020.6260519974328236No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19380.3911311318584178No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18490.373168969456251No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13820.27891807235724114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12720.2567176469163609No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA12480.25187391772925977No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12410.25046116338302193No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12040.24299374755290767No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11960.24137917115720728No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11820.2385536624647316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11300.2280589158926791No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11250.22704980564536634No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9440.1905200146926452No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9420.1901163705937201No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9170.1850708193571564No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9010.18184166656575565No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8700.17558518303241666No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8330.1681177672023024No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7830.158026664729175No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7510.15156835914637345No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7380.14894467250336035No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7260.14652280790980976No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG7260.14652280790980976No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7180.14490823151410936No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC7170.14470640946464683No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7050.14228454487109626No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG6910.13945903617862057No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6860.13844992593130787No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6850.1382481038818453No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG6710.13542259518936964No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6500.1311843321506561No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6440.12997339985388084No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6240.12593695886462988No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6210.12533149271624222No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC5960.12028594147967854No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT5940.11988229738075344No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5880.11867136508397816No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5780.11665314458935266No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5660.1142312799958021No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.11180941540225153No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5480.11059848310547624No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5450.1099930169570886No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5170.10434199957213726No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5070.10232377907751176No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5040.10171831292912414No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5010.1011128467807365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)