FastQCFastQC Report
Wed 31 May 2023
EGAF00007942846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452166
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63601.4065630763922985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24250.5363074623036672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17700.3914491580525736No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11150.24659085380148No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10340.22867707877195542No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10090.22314813586160834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9860.21806150838408903No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7600.16807986447455137No Hit
GTTATTTCTCTGACTCGTCGCACCCGTCAGA7200.15923355581799603No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6880.15215650889275179No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6410.14176209622129926No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6010.13291578756474393No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5240.1158866434008749No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5210.11522317025163326No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5040.11146348907259723No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4840.10704033474431957No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4840.10704033474431957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)