FastQCFastQC Report
Wed 31 May 2023
EGAF00007942848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482107
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66681.3830954539137579No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32700.6782726656115758No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24340.5048671767885552No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20520.4256316543837779No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16780.3480555146471634No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11330.23501007037856741No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10740.2227721232008662No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9930.20597087368571707No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8590.17817621399398886No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8580.17796879116046851No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8240.17091641482077632No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7650.15867846764307508No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7540.15639681647435114No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6690.13876587562512058No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6660.1381436071245595No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6330.1312986536183876No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5590.11594936393788101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)