FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495021
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC33280.6722947107294438No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27470.5549259526363528No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26620.5377549639308231No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG24770.5003828120423174No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23410.47290923011346997No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA23370.47210118358615094No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21900.44240547370717603No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG20660.4173560313602857No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG20080.4056393567141596No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18490.37351950725322763No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17760.3587726581296551No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA17510.3537223673339111No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14810.2991792267398757No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13170.2660493191197949No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG13070.2640292028014973No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12970.2620090864831997No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12430.25110045836439265No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT12300.24847430715060573No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11190.22605101601750227No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10280.20766795752099407No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9210.18605271291520967No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8680.17534609642823235No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8440.1704978172643181No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8060.16282137525478718No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8000.1616093054638086No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7640.15433688671793722No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6960.14060009575351348No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6950.14039808412168372No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6640.13413572353496114No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6600.13332767700764211No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6430.12989347926653616No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6310.12746933968457902No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6160.12443916520713262No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5550.11211645566551723No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5310.10726817650160297No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG5220.10545007181513512No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5160.10423800202415655No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5000.10100581591488038No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4980.10060179265122086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)