FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578475
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29070.5025281991443018No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25730.44479018107956264No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23270.4022645749600242No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20040.3464281083884351No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19550.33795756082803924No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17570.30372963395133756No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17520.3028652923635421No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16390.28333117247936385No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15310.2646613941829811No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14920.25791952979817623No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14100.2437443277583301No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13230.22870478413068843No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA12760.22057997320541078No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG12320.21297376723281042No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12000.2074419810709192No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10900.1884264661394183No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10520.18185747007217254No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10390.1796101819439042No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9890.17096676606594927No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9850.17027529279571288No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9040.15627295907342584No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8540.14762954319547084No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8320.14382644020917065No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8030.13881325899995678No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7990.1381217857297204No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7960.1376031807770431No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7870.13604736591901118No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7810.1350101560136566No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7770.1343186827434202No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT7580.13103418470979733No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7200.12446518864255153No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7180.12411945200743334No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7100.12273650546696055No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6940.11997061238601496No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA6810.11772332425774665No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6800.11755045594018756No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6760.11685898266995116No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6750.11668611435239205No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6670.11530316781191927No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6310.10907990837979169No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6300.1089070400622326No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6270.1083884351095553No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6010.10389385885301872No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5810.10043649250183673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)