FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486560
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42890.8814945741532391No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28910.5941713252219665No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22440.4611969746793818No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.22895429135152912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10360.21292338046695167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9160.18826044064452482No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7610.15640414337389016No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6760.13893456099967116No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.13256330154554424No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6360.13071358105886222No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.12989148306478132No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5910.12146497862545215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)