FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462076
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16860.3648750422008501No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11710.25342151507544214No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9980.2159817865459362No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9710.2101385919199439No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8440.18265393571620253No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6340.1372068664029294No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6150.13309498870315706No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5950.12876669638760724No Hit
ACGCACTGCGCGGGTACGTACAGACGGTTTGGAAGTACCCTGAG5740.12422198945627992No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5430.1175131363671777No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5420.11729672175140021No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5310.1149161609778478No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5070.10972221019918801No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4990.1079908932729681No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4940.10690882019408063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)