FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462076
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61981.3413377885888902No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25930.5611630987110345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16890.36552428604818255No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10040.2172802742406011No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8750.18936278880530474No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6780.146729109497139No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6740.14586345103402903No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6460.1398038417922593No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6440.1393710125607043No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6200.13417706178204453No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.12616972099827733No Hit
ATGCAAGATCAGACCGTTCCGCAGGAAGCAA5630.12184142868272752No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5510.11924445329339763No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5490.11881162406184263No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5460.11816238021451017No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5450.11794596559873269No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4770.10322977172586328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)