FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470003
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT87191.8550945419497322No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28110.5980812888428372No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18650.39680597783418403No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14820.31531713627359825No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10860.2310623549211388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9810.20872207198677456No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8930.18999878724178357No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8890.18914772884428396No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8500.18084990946866297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8120.17276485469241684No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7310.15553092214305014No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4750.10106318470307636No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4710.10021212630557676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)