FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468007
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21630.4621725743418368No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG15310.32713185913885906No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13490.288243551912685No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11600.24785954056242748No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT10950.2339708594102225No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6270.13397235511434658No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5810.12414344229893998No Hit

[OK]Adapter Content

Adapter graph