FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467853
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68071.4549441811851158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.2233607564769276No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10150.21694848595605887No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10150.21694848595605887No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9680.20690259547336448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6270.13401645388615654No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5890.1258942445597228No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5590.11948197403885408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)