FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459701
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65191.4180956752323792No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20700.45029269024866164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10190.22166582191467935No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9810.213399579291757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9690.21078918688451845No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7490.16293199275181042No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6040.1313897511643438No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5780.1257339009486601No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5570.12116571423599251No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5460.11877285452935712No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5450.1185553218287539No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5040.10963648110402197No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4720.10267543468471899No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4610.10028257497808359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)