FastQCFastQC Report
Wed 31 May 2023
EGAF00007942881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444734
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12640.2842148340356258No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10170.2286760175745502No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8950.20124388960592174No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8200.18437987651045346No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7100.15964599063709992No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5840.13131444863671318No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5720.12861620654143824No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4910.11040307239833248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)