FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444734
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62821.412529736876425No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17610.39596702748159573No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12380.27836864282919677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10530.23677074386037497No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9750.2192321702410879No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5700.12816649952555909No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5620.12636767146204247No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.11512499606506361No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4460.10028466454105152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)