FastQCFastQC Report
Sun 21 May 2023
EGAF00007942883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442998
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG29340.6623054731624071No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG21590.48736111675447746No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG21140.47720305735014606No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG19560.44153698210827136No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG18540.41851204745845355No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG17730.400227540530657No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG15530.35056591677614796No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG13420.3029359049025052No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13390.30225870094221646No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG11010.24853385342597487No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG10890.2458250375848198No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG10670.2408588752093689No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10620.23973020194222094No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG10110.22821773461731204No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG9900.22347730689529074No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT9140.20632147323464217No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9120.20587000392778299No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG8990.20293545343319833No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8810.19887222967146576No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8750.19751782175088825No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT8450.19074578214800067No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG8220.1855538851191202No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC6840.1544025029458372No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6650.1501135445306751No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT6600.14898487126352716No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6470.14605032076894253No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6160.13905254651262533No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5890.1329577108700265No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT5770.13024889502887146No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5610.12663714057399808No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5190.11715628512995543No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4930.11128718414078619No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4620.104289409884469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)