FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442998
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62711.4155820116569375No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG32000.7223508909746771No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG24310.548760942487325No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC23990.5415374335775782No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG20990.47381703754870225No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC19730.44537447121657436No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG19690.444471532602856No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG18840.42528408706134113No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG17470.3943584395414878No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC14180.32009173856315376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13460.3038388435162236No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG12160.2744933385703773No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11350.2562088316425808No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG11000.24830811877254527No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10750.2426647524368056No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10440.2356669781804884No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10170.22957214253788955No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG10110.22821773461731204No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG10100.22799199996388245No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9740.2198655524404173No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9710.21918834848012858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9120.20587000392778299No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8920.20135531085919123No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7990.18036198809023968No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7760.1751700910613592No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7520.16975245937904912No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7330.16546350096388698No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC7090.16004586928157688No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6880.15530544155955556No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6310.14243856631406915No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6120.13814960789890698No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG5890.1329577108700265No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5270.11896216235739213No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5130.11580187720937792No Hit
GGTCCAGCTCACTCTAAAGAAGTGCCGGCGC5120.11557614255594834No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5070.11444746928880041No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4610.10406367523103943No Hit
TCCAAAGAAATCCCGGCCCTGACCGCAGTGG4600.10383794057760984No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4520.10203206335017315No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4470.10090339008302521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)