FastQCFastQC Report
Wed 31 May 2023
EGAF00007942885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463871
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21940.4729763231588092No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19320.4164951031644573No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11240.24230874531928057No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9970.2149304440243085No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7290.15715576097665085No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6930.14939498265681622No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6710.14465228479469508No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6400.13796939235261527No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6250.13473573471935085No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6040.13020861403278067No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5830.12568149334621048No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5510.11878302372857971No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5090.10972878235543933No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4870.10498608449331819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)