FastQCFastQC Report
Wed 31 May 2023
EGAF00007942886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463871
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49031.0569748917263635No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28440.6131014872669341No Hit
ATGTCCAACATGGACATCGATGGTATTAACA11540.2487760605858094No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10060.2168706386042671No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10030.21622390707761427No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7390.15931153273216045No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6530.14077189563477777No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6280.13538246624600372No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6210.13387342601714702No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6200.13365784884159604No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6060.13063976838388258No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.1295618825061278No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5610.12093879548408934No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5380.11598052044641723No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.11490263456866241No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4870.10498608449331819No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4760.10261473556225761No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4660.10045896380674799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)