FastQCFastQC Report
Wed 31 May 2023
EGAF00007942888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470381
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28970.6158837197931039No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26980.5735775892308576No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16910.3594958129686361No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13300.2827495158180284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.27956061150429123No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11440.24320710232768758No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6570.1396740089416877No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5670.12054058305926472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)